STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY86637.1Cold shock domain protein CspD; Derived by automated computational analysis using gene prediction method: Protein Homology. (67 aa)    
Predicted Functional Partners:
APY86636.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.881
APY88579.1
Ribonuclease II; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.863
APY86058.1
Polyribonucleotide nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.837
APY86881.1
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.826
A7J05_18795
tRNA-Asp; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.821
APY88844.1
ATP-dependent helicase HrpB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.821
APY88084.1
Ribonuclease PH; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.813
APY86854.1
50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.807
A7J05_01650
Hypothetical protein; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.806
APY87505.1
RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.806
Your Current Organism:
Streptomyces silaceus
NCBI taxonomy Id: 545123
Other names: DSM 41861, LDDC 6638-99, NRRL B-24166, S. silaceus, Streptomyces silaceus Labeda et al. 2009, Streptomyces sp. NRRL B-24166
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.