STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY88097.1SGNH hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)    
Predicted Functional Partners:
APY88166.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.781
APY89747.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.735
APY85390.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.725
APY87182.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.643
APY87597.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.626
APY88164.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.626
APY84705.1
Kanamycin biosynthetic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.623
APY84887.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.623
APY90561.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.623
APY86843.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.623
Your Current Organism:
Streptomyces silaceus
NCBI taxonomy Id: 545123
Other names: DSM 41861, LDDC 6638-99, NRRL B-24166, S. silaceus, Streptomyces silaceus Labeda et al. 2009, Streptomyces sp. NRRL B-24166
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.