STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY88120.1Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)    
Predicted Functional Partners:
A7J05_35935
Glycosyl hydrolase family 5; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.824
APY89747.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.823
APY85390.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.818
APY86649.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.808
A7J05_06405
Cellulose 1,4-beta-cellobiosidase; Incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.798
APY91347.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.740
A7J05_22875
Sugar hydrolase; Frameshifted; incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.713
APY88411.1
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.713
APY88122.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.703
APY90785.1
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.691
Your Current Organism:
Streptomyces silaceus
NCBI taxonomy Id: 545123
Other names: DSM 41861, LDDC 6638-99, NRRL B-24166, S. silaceus, Streptomyces silaceus Labeda et al. 2009, Streptomyces sp. NRRL B-24166
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.