STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY88164.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (867 aa)    
Predicted Functional Partners:
APY88166.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.961
APY88177.1
Phage portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.918
APY89747.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.879
APY88175.1
Major capsid protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.849
APY88165.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.806
APY88167.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.752
APY91060.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.733
APY91061.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.726
APY85779.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.719
A7J05_22875
Sugar hydrolase; Frameshifted; incomplete; partial on complete genome; missing start; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.718
Your Current Organism:
Streptomyces silaceus
NCBI taxonomy Id: 545123
Other names: DSM 41861, LDDC 6638-99, NRRL B-24166, S. silaceus, Streptomyces silaceus Labeda et al. 2009, Streptomyces sp. NRRL B-24166
Server load: medium (68%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.