STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APY88337.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (220 aa)    
Predicted Functional Partners:
APY89747.1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.767
APY86803.1
Glutamine-hydrolyzing GMP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.749
APY86815.1
IMP dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.710
APY88341.1
valine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.644
APY84994.1
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.623
APY90622.1
SGNH hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.623
APY85401.1
Rhamnogalacturonan acetylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.623
APY85586.1
G-D-S-L family lipolytic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.623
APY87277.1
G-D-S-L family lipolytic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.623
APY87347.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.623
Your Current Organism:
Streptomyces silaceus
NCBI taxonomy Id: 545123
Other names: DSM 41861, LDDC 6638-99, NRRL B-24166, S. silaceus, Streptomyces silaceus Labeda et al. 2009, Streptomyces sp. NRRL B-24166
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.