STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ST47_g9040Integral component of membrane. (436 aa)    
Predicted Functional Partners:
ST47_g895
UBA domain-containing protein.
    
 0.580
ST47_g1503
WD_REPEATS_REGION domain-containing protein.
    
 0.550
ST47_g5535
SPRY domain-containing protein.
    
 0.549
ST47_g2915
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.540
ST47_g8744
Uncharacterized protein.
    
 0.537
ST47_g6726
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.535
ATG1
ATP binding.
    
 0.535
SEC13
mRNA transport; Belongs to the WD repeat SEC13 family.
    
 0.534
ST47_g615
Uncharacterized protein; Belongs to the WD repeat SEC13 family.
    
 0.524
ST47_g6943
Ubiquitin-like domain-containing protein.
    
  0.512
Your Current Organism:
Ascochyta rabiei
NCBI taxonomy Id: 5454
Other names: A. rabiei, CBS 237.37, Didymella rabiei, Mycosphaerella rabiei, Mycosphaerella rabiei Kovacheski, Phoma rabiei, Zythia rabiei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.