STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ST47_g8846Lyase; Belongs to the DapA family. (324 aa)    
Predicted Functional Partners:
ST47_g8277
Catalytic.
     
 0.788
ST47_g10129
Tryptophan synthase.
    
  0.765
ST47_g3284
Oxidoreductase.
 
   
 0.752
ST47_g5194
Oxidoreductase.
 
   
 0.724
ST47_g7993
Glutamate-cysteine ligase.
    
 0.577
ST47_g8735
Catalytic.
   
 
 0.534
ST47_g6716
Catalytic.
   
 
 0.529
ST47_g10174
Aspartate aminotransferase.
   
 0.522
ST47_g8303
Aspartate aminotransferase.
   
  0.522
ST47_g6949
Lyase.
  
  
 
0.512
Your Current Organism:
Ascochyta rabiei
NCBI taxonomy Id: 5454
Other names: A. rabiei, CBS 237.37, Didymella rabiei, Mycosphaerella rabiei, Mycosphaerella rabiei Kovacheski, Phoma rabiei, Zythia rabiei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.