STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ST47_g5572Aspartate-tRNA ligase. (1015 aa)    
Predicted Functional Partners:
ST47_g3744
ATP binding; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.951
ST47_g4834
ATP binding.
  
 0.948
ST47_g214
ATP binding; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.930
ST47_g10227
ATP binding; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.916
ST47_g3554
Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
  
 0.908
ST47_g4854
tRNA binding.
  
 0.901
ST47_g8881
Aminoacyl-tRNA editing; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.900
ST47_g7967
Aminoacyl-tRNA editing.
  
 0.885
SLX1
Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.
   
 0.869
ST47_g9213
Aminoacyl-tRNA ligase.
  
0.852
Your Current Organism:
Ascochyta rabiei
NCBI taxonomy Id: 5454
Other names: A. rabiei, CBS 237.37, Didymella rabiei, Mycosphaerella rabiei, Mycosphaerella rabiei Kovacheski, Phoma rabiei, Zythia rabiei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.