Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ST47_g1403 | ST47_g340 | A0A163L1D0 | A0A163M8I2 | ATP binding; Belongs to the heat shock protein 70 family. | Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. | 0.692 |
ST47_g1403 | ST47_g4833 | A0A163L1D0 | A0A163ETT0 | ATP binding; Belongs to the heat shock protein 70 family. | ATP binding. | 0.917 |
ST47_g1403 | ST47_g5295 | A0A163L1D0 | A0A163E863 | ATP binding; Belongs to the heat shock protein 70 family. | Nucleic acid binding. | 0.786 |
ST47_g1403 | ST47_g777 | A0A163L1D0 | A0A163LST0 | ATP binding; Belongs to the heat shock protein 70 family. | Translation initiation factor. | 0.518 |
ST47_g2104 | ST47_g2656 | A0A163K3M4 | A0A163J6U0 | ATP binding; Belongs to the DEAD box helicase family. | Nuclear cap-binding protein subunit 2. | 0.870 |
ST47_g2104 | ST47_g340 | A0A163K3M4 | A0A163M8I2 | ATP binding; Belongs to the DEAD box helicase family. | Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. | 0.868 |
ST47_g2104 | ST47_g358 | A0A163K3M4 | A0A163MAL6 | ATP binding; Belongs to the DEAD box helicase family. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | 0.583 |
ST47_g2104 | ST47_g4833 | A0A163K3M4 | A0A163ETT0 | ATP binding; Belongs to the DEAD box helicase family. | ATP binding. | 0.652 |
ST47_g2104 | ST47_g5295 | A0A163K3M4 | A0A163E863 | ATP binding; Belongs to the DEAD box helicase family. | Nucleic acid binding. | 0.576 |
ST47_g2104 | ST47_g7233 | A0A163K3M4 | A0A163B606 | ATP binding; Belongs to the DEAD box helicase family. | GTPase. | 0.522 |
ST47_g2104 | ST47_g777 | A0A163K3M4 | A0A163LST0 | ATP binding; Belongs to the DEAD box helicase family. | Translation initiation factor. | 0.503 |
ST47_g2104 | ST47_g9437 | A0A163K3M4 | A0A162XBG2 | ATP binding; Belongs to the DEAD box helicase family. | RNA cap binding. | 0.886 |
ST47_g2104 | TIF35 | A0A163K3M4 | A0A163LYW3 | ATP binding; Belongs to the DEAD box helicase family. | Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. | 0.664 |
ST47_g2656 | ST47_g2104 | A0A163J6U0 | A0A163K3M4 | Nuclear cap-binding protein subunit 2. | ATP binding; Belongs to the DEAD box helicase family. | 0.870 |
ST47_g2656 | ST47_g340 | A0A163J6U0 | A0A163M8I2 | Nuclear cap-binding protein subunit 2. | Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. | 0.961 |
ST47_g2656 | ST47_g358 | A0A163J6U0 | A0A163MAL6 | Nuclear cap-binding protein subunit 2. | U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. | 0.939 |
ST47_g2656 | ST47_g5295 | A0A163J6U0 | A0A163E863 | Nuclear cap-binding protein subunit 2. | Nucleic acid binding. | 0.589 |
ST47_g2656 | ST47_g9437 | A0A163J6U0 | A0A162XBG2 | Nuclear cap-binding protein subunit 2. | RNA cap binding. | 0.999 |
ST47_g340 | ST47_g1403 | A0A163M8I2 | A0A163L1D0 | Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. | ATP binding; Belongs to the heat shock protein 70 family. | 0.692 |
ST47_g340 | ST47_g2104 | A0A163M8I2 | A0A163K3M4 | Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. | ATP binding; Belongs to the DEAD box helicase family. | 0.868 |
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