STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEI80628.1Sensor protein KdpD. (230 aa)    
Predicted Functional Partners:
kinA
Sporulation kinase A.
   
 0.876
CEI81852.1
Hypothetical protein.
  
     0.695
graR
Response regulator protein GraR.
 
 0.687
liaS_1
Sensor histidine kinase LiaS.
    
 0.649
yycF_1
Transcriptional regulatory protein YycF.
  
 0.641
hssR
Heme response regulator HssR.
  
 0.641
walR_1
Transcriptional regulatory protein WalR.
  
 0.641
arlR
Response regulator ArlR.
  
 0.641
yycF_3
Transcriptional regulatory protein YycF.
  
 0.641
yycF_4
Transcriptional regulatory protein YycF.
  
 0.641
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.