Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ykfBL-Ala-D/L-Glu epimerase. (373 aa)    
Predicted Functional Partners:
CEI80690.1
L-Ala-D/L-Glu epimerase.
  
  
 
0.906
ykfC
Gamma-D-glutamyl-L-lysine endopeptidase.
 
  
 0.889
ykfA_2
Putative murein peptide carboxypeptidase.
 
    0.789
oppF_2
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
  
    0.778
dppA
D-aminopeptidase.
 
    0.612
ymdB
O-acetyl-ADP-ribose deacetylase.
   
   0.533
CEI83133.1
Peptidase family S58.
 
     0.497
dppE
Dipeptide-binding protein DppE precursor.
  
    0.486
CEI80655.1
D-alanyl-D-alanine carboxypeptidase.
 
     0.454
dppB_1
Dipeptide transport system permease protein DppB.
  
    0.404
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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