STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadA_13-ketoacyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family. (385 aa)    
Predicted Functional Partners:
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
 
 0.999
pksG
Polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase PksG.
  
 0.991
acdA_1
Acyl-CoA dehydrogenase.
 
 0.967
mmgB_1
Putative 3-hydroxybutyryl-CoA dehydrogenase.
 0.947
mmgB_2
Putative 3-hydroxybutyryl-CoA dehydrogenase.
 0.940
acdA_2
Acyl-CoA dehydrogenase.
 
 0.938
paaF_1
2,3-dehydroadipyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.934
fadB
Putative enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.894
paaF_3
2,3-dehydroadipyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.888
paaF_2
2,3-dehydroadipyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.875
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.