Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
araQ_3L-arabinose transport system permease protein AraQ. (297 aa)    
Predicted Functional Partners:
yteP_2
Putative multiple-sugar transport system permease YteP.
 
  
 0.944
lipO_2
Lipoprotein LipO precursor.
 
   0.914
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
 
 0.913
yteP_3
Putative multiple-sugar transport system permease YteP.
 
 
 0.893
lacF_1
Lactose transport system permease protein LacF.
 
 
 0.891
lacF_2
Lactose transport system permease protein LacF.
 
 
 0.886
lacF_3
Lactose transport system permease protein LacF.
 
 
 0.878
ugpA
Sn-glycerol-3-phosphate transport system permease protein UgpA.
 
 
 0.877
cycB_1
Cyclodextrin-binding protein precursor.
 
 
 0.872
lipO_1
Lipoprotein LipO precursor.
 
   0.862
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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