STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treRTrehalose operon transcriptional repressor. (237 aa)    
Predicted Functional Partners:
treB
PTS system trehalose-specific EIIBC component.
 
  
 0.868
treA
Trehalose-6-phosphate hydrolase.
 
  
 0.830
yvoA_5
HTH-type transcriptional repressor YvoA.
  
     0.741
bglF_2
PTS system beta-glucoside-specific EIIBCA component.
 
  
 0.513
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
 
  
 0.473
bglF_5
PTS system beta-glucoside-specific EIIBCA component.
 
  
 0.426
bglF_3
PTS system beta-glucoside-specific EIIBCA component.
  
     0.420
bglF_4
PTS system beta-glucoside-specific EIIBCA component.
 
  
 0.416
bglF_6
PTS system beta-glucoside-specific EIIBCA component.
 
  
 0.407
lutR_3
HTH-type transcriptional regulator LutR.
  
    0.403
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.