Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
oppF_4Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (322 aa)    
Predicted Functional Partners:
dppC
Dipeptide transport system permease protein DppC.
 
 0.956
gsiD_3
Glutathione transport system permease protein GsiD.
 
 0.954
gsiD_2
Glutathione transport system permease protein GsiD.
 
 0.943
gsiD_1
Glutathione transport system permease protein GsiD.
 
 0.929
dppB_2
Dipeptide transport system permease protein DppB.
 
 
 0.916
nikC
Nickel transport system permease protein NikC.
 
 0.895
gsiC_1
Glutathione transport system permease protein GsiC.
 
 
 0.889
dppB_3
Dipeptide transport system permease protein DppB.
 
 
 0.886
dppB_1
Dipeptide transport system permease protein DppB.
 
 
 0.885
oppD_2
Oligopeptide transport ATP-binding protein OppD.
  
0.858
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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