Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dppB_2Dipeptide transport system permease protein DppB. (333 aa)    
Predicted Functional Partners:
gsiD_2
Glutathione transport system permease protein GsiD.
 
 
 0.985
hbpA
Heme-binding protein A precursor.
 
 
 0.949
gsiD_3
Glutathione transport system permease protein GsiD.
 
 0.947
gsiD_1
Glutathione transport system permease protein GsiD.
 
 0.946
dppC
Dipeptide transport system permease protein DppC.
 
 0.946
nikC
Nickel transport system permease protein NikC.
 
 
 0.946
oppC
Oligopeptide transport system permease protein OppC.
 
 
 0.934
oppF_3
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.931
oppD_2
Oligopeptide transport ATP-binding protein OppD.
 
 
 0.928
oppD_5
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 0.920
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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