Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEI82575.1Hypothetical protein. (323 aa)    
Predicted Functional Partners:
CEI83536.1
Hypothetical protein.
  
  
 0.936
CEI82576.1
Hypothetical protein.
 
   
 0.896
CEI82577.1
Transcriptional regulator PadR-like family protein.
 
  
 0.827
safA
SpoIVD-associated factor A.
  
 
   0.550
yocH_1
Cell wall-binding protein YocH precursor.
 
 
   0.547
CEI81889.1
Hypothetical protein; Spore germination B3/ GerAC like, C-terminal.
  
     0.512
CEI81217.1
DNA-binding transcriptional activator PspC.
  
  
 0.507
yocH_2
Cell wall-binding protein YocH precursor.
   
   0.487
lytE
Putative peptidoglycan endopeptidase LytE precursor.
    
   0.479
CEI81479.1
Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ).
    
   0.479
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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