Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
lipO_4Lipoprotein LipO precursor. (539 aa)    
Predicted Functional Partners:
yteP_3
Putative multiple-sugar transport system permease YteP.
 
   0.955
araQ_5
L-arabinose transport system permease protein AraQ.
 
   0.946
araQ_2
L-arabinose transport system permease protein AraQ.
 
   0.890
araQ_3
L-arabinose transport system permease protein AraQ.
 
   0.857
yteP_1
Putative multiple-sugar transport system permease YteP.
 
    0.789
yteP_2
Putative multiple-sugar transport system permease YteP.
 
    0.777
CEI82608.1
Hypothetical protein.
 
     0.773
lipO_2
Lipoprotein LipO precursor.
  
     0.721
potA_2
Spermidine/putrescine import ATP-binding protein PotA.
  
   0.691
sugC
Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily.
  
   0.691
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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