Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CEI82612.1Cytidine deaminase. (135 aa)    
Predicted Functional Partners:
pdp
Pyrimidine-nucleoside phosphorylase.
  
 
 0.931
tdk
Thymidine kinase.
    
 0.916
udk_3
Uridine kinase.
    
 0.908
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
     
  0.900
yydK
Putative HTH-type transcriptional regulator YydK.
 
     0.590
CEI82455.1
Hypothetical protein.
 
     0.575
mshD_4
Mycothiol acetyltransferase.
       0.568
CEI84025.1
Helix-turn-helix domain protein.
  
     0.537
CEI82739.1
Helix-turn-helix domain protein.
  
     0.498
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
  
 0.444
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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