Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEI82624.1Hypothetical protein. (178 aa)    
Predicted Functional Partners:
CEI82625.1
Hypothetical protein.
     0.956
CEI82622.1
Hypothetical protein.
 
     0.826
CEI82621.1
Hypothetical protein.
 
     0.825
gerAC
Spore germination protein A3 precursor.
 
     0.596
CEI82623.1
Hypothetical protein.
 
    
0.584
CEI81821.1
Hypothetical protein.
  
     0.543
CEI84469.1
Hypothetical protein.
  
     0.509
CEI81755.1
N-acetyltransferase; Belongs to the arylamine N-acetyltransferase family.
  
     0.507
yndE_2
Spore germination protein YndE.
 
     0.500
CEI80256.1
Inhibitor of sigma-G Gin.
  
     0.462
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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