Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csoR_1Copper-sensing transcriptional repressor CsoR. (108 aa)    
Predicted Functional Partners:
csoR_3
Copper-sensing transcriptional repressor CsoR.
  
     0.763
adhD
Putative alcohol dehydrogenase D.
  
  
 0.609
copZ_3
Copper chaperone CopZ.
  
  
 0.570
csoR_2
Copper-sensing transcriptional repressor CsoR.
 
    
0.553
glpE_3
Thiosulfate sulfurtransferase GlpE; Belongs to the sulfur carrier protein TusA family.
     
 0.553
cdr_1
Coenzyme A disulfide reductase.
       0.474
fliN
Flagellar motor switch protein FliN.
    
   0.447
copA_2
Copper-exporting P-type ATPase A.
 
    0.415
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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