STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEI83014.1RNA polymerase sigma factor. (162 aa)    
Predicted Functional Partners:
CEI83015.1
Helix-turn-helix domain protein.
 
    0.953
CEI82962.1
Replication initiation factor.
  
  
 0.838
CEI82960.1
Hypothetical protein.
  
   
 0.790
CEI82965.1
Antirestriction protein (ArdA).
  
  
 0.769
CEI82964.1
Antirestriction protein (ArdA).
  
  
 0.767
CEI82959.1
Hypothetical protein.
  
    0.761
ftsK
DNA translocase FtsK.
  
    0.758
CEI82963.1
Hypothetical protein.
  
    0.757
CEI82966.1
TcpE family protein.
  
    0.756
CEI82968.1
Hypothetical protein.
 
     0.754
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.