Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpfCSensory/regulatory protein RpfC. (1009 aa)    
Predicted Functional Partners:
yehT_1
Transcriptional regulatory protein YehT.
 
     0.890
fliN
Flagellar motor switch protein FliN.
  
  
 0.859
kinA
Sporulation kinase A.
 
 
0.787
CEI84288.1
Flagellar biosynthesis protein, FliO.
 
  
 0.784
fliM
Flagellar motor switch protein FliM.
  
  
 0.760
yehT_2
Transcriptional regulatory protein YehT.
 
     0.713
ylxH_2
Flagellum site-determining protein YlxH.
  
 
 0.684
fliP
Flagellar biosynthetic protein FliP precursor; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
  
  
 0.641
CEI84292.1
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
  
 0.631
CEI84296.1
Flagellar hook-length control protein FliK.
 
  
 0.628
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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