STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEI83548.1ABC-2 family transporter protein. (259 aa)    
Predicted Functional Partners:
ybhF_5
Putative ABC transporter ATP-binding protein YbhF.
  
  0.878
CEI83547.1
ABC-2 family transporter protein.
       0.763
srrA_3
Transcriptional regulatory protein SrrA.
       0.761
phoR_5
Alkaline phosphatase synthesis sensor protein PhoR.
       0.757
yxlF_1
Putative ABC transporter ATP-binding protein YxlF.
  
  0.487
yxlF_3
Putative ABC transporter ATP-binding protein YxlF.
  
  0.487
yxlF_4
Putative ABC transporter ATP-binding protein YxlF.
  
  0.487
CEI82335.1
Fluoroquinolones export ATP-binding proteinc/MT2762.
  
  0.487
opuCA_2
Carnitine transport ATP-binding protein OpuCA.
  
  0.487
yxlF_5
Putative ABC transporter ATP-binding protein YxlF.
  
  0.487
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.