Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEI83551.1Hypothetical protein. (588 aa)    
Predicted Functional Partners:
spsB
Signal peptidase IB; Belongs to the peptidase S26 family.
   
    0.789
betI_1
HTH-type transcriptional regulator BetI.
   
    0.748
betI_5
HTH-type transcriptional regulator BetI.
   
    0.748
CEI83648.1
Hypothetical protein.
  
     0.615
CEI83167.1
Epimerase family protein.
   
    0.564
CEI83992.1
Hypothetical protein.
  
     0.561
CEI82232.1
Peptidase propeptide and YPEB domain protein.
  
     0.560
CEI83582.1
Plasmid pRiA4b ORF-3-like protein.
  
     0.541
CEI80571.1
Bacterial ABC transporter protein EcsB.
  
     0.518
rpoN_2
RNA polymerase sigma-54 factor.
  
    0.512
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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