Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yxlF_9Putative ABC transporter ATP-binding protein YxlF. (244 aa)    
Predicted Functional Partners:
CEI83568.1
ABC-2 family transporter protein.
 
   0.894
CEI83569.1
ABC-2 family transporter protein.
 
   0.727
CEI83306.1
ABC-2 family transporter protein.
 
 
 0.520
CEI83530.1
ABC-2 family transporter protein.
 
 
 0.517
araG
Arabinose import ATP-binding protein AraG.
 
     0.455
walR_2
Transcriptional regulatory protein WalR.
       0.453
yycG_3
Sensor histidine kinase YycG.
       0.453
CEI82895.1
Putative ABC transporter ATP-binding protein/MT1014.
 
    
0.449
CEI82259.1
ABC-2 family transporter protein.
  
   0.437
drrB
Daunorubicin/doxorubicin resistance ABC transporter permease protein DrrB.
  
    0.422
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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