Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lipRPutative acetyl-hydrolase LipR precursor. (300 aa)    
Predicted Functional Partners:
ctaC
Cytochrome c oxidase subunit 2 precursor; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
   0.856
acpA
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.774
puuB
Gamma-glutamylputrescine oxidoreductase.
   
   0.766
CEI81796.1
Hypothetical protein.
    
 
 0.758
yhfK_1
Putative sugar epimerase YhfK.
  
   0.702
yhfK_2
Putative sugar epimerase YhfK.
  
   0.702
petC
Cytochrome b6-f complex iron-sulfur subunit.
    
   0.694
CEI82246.1
Acyltransferase PapA5.
    0.609
CEI83645.1
Ankyrin repeats (3 copies).
    
 0.550
albF
Putative zinc protease AlbF.
    
 
 0.530
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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