STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVBStage V sporulation protein B. (516 aa)    
Predicted Functional Partners:
CEI83871.1
Hypothetical protein.
 
    0.799
spoIIE
Stage II sporulation protein E.
  
   
 0.749
ylbJ
Sporulation integral membrane protein YlbJ.
  
  
 0.714
spoIIIAE
Stage III sporulation protein AE precursor.
  
  
 0.700
cotE
Spore coat protein E.
  
  
 0.694
ydcC
Sporulation protein YdcC.
  
     0.692
yabQ
Spore protein YabQ.
 
  
 0.690
CEI84202.1
Stage II sporulation protein P (SpoIIP).
  
   
 0.683
CEI84127.1
Bacterial protein YqhG of unknown function.
  
     0.681
comN
Post-transcriptional regulator ComN.
 
     0.675
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.