STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIVFAStage IV sporulation protein FA. (262 aa)    
Predicted Functional Partners:
spoIVFB
Stage IV sporulation protein FB.
 
  
 0.955
spoIIIAH
Stage III sporulation protein AH.
  
  
 0.805
CEI84106.1
Stage III sporulation protein AF (Spore_III_AF).
  
    0.780
spoVID
Stage VI sporulation protein D.
  
   
 0.777
CEI84114.1
Conserved membrane protein YqhR.
  
     0.760
CEI83871.1
Hypothetical protein.
  
    0.754
bofA
Sigma-K factor-processing regulatory protein BofA.
  
   
 0.751
CEI84127.1
Bacterial protein YqhG of unknown function.
  
     0.748
yabQ
Spore protein YabQ.
  
     0.743
CEI84202.1
Stage II sporulation protein P (SpoIIP).
  
   
 0.735
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.