STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbnRibonuclease BN. (242 aa)    
Predicted Functional Partners:
lplJ
Lipoate-protein ligase LplJ.
  
    0.620
CEI84037.1
Hypothetical protein.
       0.592
ybhF_3
Putative ABC transporter ATP-binding protein YbhF.
  
     0.553
CEI82259.1
ABC-2 family transporter protein.
  
     0.553
ecsA_2
ABC-type transporter ATP-binding protein EcsA.
  
     0.519
thiN
Thiamine pyrophosphokinase.
    
  0.512
CEI82754.1
Hypothetical protein.
  
     0.494
rny
Ribonuclease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
     
 0.405
gluP_2
Rhomboid protease GluP.
 
 
   0.404
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.