STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
liaR_4Transcriptional regulatory protein LiaR. (213 aa)    
Predicted Functional Partners:
liaS_3
Sensor histidine kinase LiaS.
 0.995
liaS_2
Sensor histidine kinase LiaS.
 
 0.981
liaS_1
Sensor histidine kinase LiaS.
 
 0.964
comP
Sensor histidine kinase ComP.
 
 0.926
desK
Sensor histidine kinase DesK.
 
 0.916
degS
Signal transduction histidine-protein kinase/phosphatase DegS; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase.
 0.902
liaR_3
Transcriptional regulatory protein LiaR.
  
  
 
0.852
CEI80974.1
Tetratricopeptide repeat.
    
 0.836
fliN
Flagellar motor switch protein FliN.
  
 
 0.781
nprA_2
Transcriptional activator NprA.
    
  0.732
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.