Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEI84114.1Conserved membrane protein YqhR. (168 aa)    
Predicted Functional Partners:
CEI84106.1
Stage III sporulation protein AF (Spore_III_AF).
 
     0.829
spoIIIAH
Stage III sporulation protein AH.
 
     0.809
spoVID
Stage VI sporulation protein D.
  
     0.774
CEI84557.1
Hypothetical protein.
  
     0.772
bofA
Sigma-K factor-processing regulatory protein BofA.
  
     0.771
ytrI
Sporulation membrane protein YtrI.
  
     0.771
CEI80219.1
Von Willebrand factor type A domain protein.
  
     0.770
CEI84413.1
Hypothetical protein.
  
     0.770
yabQ
Spore protein YabQ.
  
     0.769
CEI83152.1
Hypothetical protein.
  
     0.767
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.