Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
comEAComE operon protein 1. (202 aa)    
Predicted Functional Partners:
CEI84206.1
ComEC family competence protein.
 
  
 0.957
tadA_2
tRNA-specific adenosine deaminase.
  
  
 0.947
CEI84131.1
Type IV pilin biogenesis protein.
  
  
 0.924
uvrB_1
UvrABC system protein B.
   
  
 0.915
epsE
Type II secretion system protein E.
  
  
 0.915
comGC
ComG operon protein 3 precursor; Required for transformation and DNA binding.
   
  
 0.899
comC
Type 4 prepilin-like proteins leader peptide-processing enzyme.
   
  
 0.876
CEI81190.1
DNA utilization protein GntX.
 
  
 0.754
CEI84542.1
Competence protein CoiA-like family protein.
   
  
 0.726
ssb
Single-stranded DNA-binding protein ssb; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.718
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.