Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ytrHSporulation membrane protein YtrH. (110 aa)    
Predicted Functional Partners:
ytrI
Sporulation membrane protein YtrI.
 
  
 0.982
CEI84179.1
YabP family protein.
  
   
 0.763
spoIIE
Stage II sporulation protein E.
  
     0.750
spoIIIAE
Stage III sporulation protein AE precursor.
  
     0.736
CEI80219.1
Von Willebrand factor type A domain protein.
  
     0.729
ylbJ
Sporulation integral membrane protein YlbJ.
  
   
 0.727
spoIIM
Stage II sporulation protein M; Required for complete septum migration and engulfment of the forespore compartment during sporulation. Required for stabilizing and recruiting of SpoIIP to the septal membrane.
  
     0.706
yunB
Sporulation protein YunB.
  
   
 0.704
CEI84106.1
Stage III sporulation protein AF (Spore_III_AF).
  
     0.704
dnaE
DNA polymerase III subunit alpha.
       0.700
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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