Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEI84521.1CsbD-like protein. (66 aa)    
Predicted Functional Partners:
CEI82466.1
Hypothetical protein.
  
     0.694
CEI80694.1
OsmC-like protein.
  
    0.646
katE_3
Catalase HPII; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.630
ydaG
General stress protein 26.
  
    0.615
ohrB
Organic hydroperoxide resistance protein OhrB.
  
    0.588
CEI81020.1
Transglycosylase associated protein.
  
  
 0.581
yflT
General stress protein 17M.
   
    0.579
CEI84428.1
Hypothetical protein.
   
    0.578
CEI84435.1
Hypothetical protein.
   
    0.576
tagH
Teichoic acids export ATP-binding protein TagH.
  
    0.572
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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