Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CEI84528.1Hypothetical protein. (237 aa)    
Predicted Functional Partners:
CEI84473.1
SpoVA protein.
 
  
 0.758
spoVAD
Stage V sporulation protein AD.
 
  
 0.731
gerBA_1
Spore germination protein B1.
 
   
 0.689
gerBA_2
Spore germination protein B1.
 
   
 0.682
spoIVB
SpoIVB peptidase precursor.
  
     0.651
CEI84471.1
SpoVA protein.
 
  
 0.651
yunB
Sporulation protein YunB.
  
     0.647
gerXA
Spore germination protein XA.
 
   
 0.641
yabP
Spore protein YabP.
  
     0.617
gerAA_1
Spore germination protein A1.
  
     0.605
Your Current Organism:
Oceanobacillus oncorhynchi
NCBI taxonomy Id: 545501
Other names: JCM 12661, NCIMB 14022, O. oncorhynchi, Oceanobacillus oncorhynchi Yumoto et al. 2005 emend. Romano et al. 2006, strain R-2
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