STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
htrA-2Do/DeqQ family serine protease; IMG locus_tag: BAR153v2_004250; Belongs to the peptidase S1C family. (464 aa)    
Predicted Functional Partners:
secD
Protein translocase subunit secF /protein translocase subunit secD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
 
 0.808
OPB31477.1
Recombination protein MgsA; IMG locus_tag: BAR153v2_004260.
       0.774
OPB31480.1
alanyl-tRNA synthetase; IMG locus_tag: BAR153v2_004290.
 
 
  0.692
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain; Belongs to the class-II aminoacyl-tRNA synthetase family.
 
 
  0.688
OPB31907.1
Acyl dehydratase; IMG locus_tag: BAR153v2_008730.
    
  0.662
OPB32198.1
Hypothetical protein; IMG locus_tag: BAR153v2_011840.
 
 
 0.649
rplQ
LSU ribosomal protein L17P; IMG locus_tag: BAR153v2_004240.
   
   0.627
aidB
Putative acyl-CoA dehydrogenase; IMG locus_tag: BAR153v2_005870.
    
  0.616
ialA
Putative (di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily.
    
  0.578
lon
ATP-dependent proteinase, Serine peptidase, MEROPS family S16; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.
    
 0.559
Your Current Organism:
Bartonella sp. AR 153
NCBI taxonomy Id: 545617
Other names: B. sp. AR 15-3, Bartonella sp. AR 15-3
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