STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPB31875.1Putative membrane protein YcaP, DUF421 family; IMG locus_tag: BAR153v2_008410. (222 aa)    
Predicted Functional Partners:
cysS
cysteinyl-tRNA synthetase; IMG locus_tag: BAR153v2_008420; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.634
OPB31874.1
ATP-binding cassette, subfamily B; IMG locus_tag: BAR153v2_008400.
       0.499
dacA
Penicillin-binding protein 6, Serine peptidase, MEROPS family S11; IMG locus_tag: BAR153v2_004510; Belongs to the peptidase S11 family.
  
     0.443
dacA-2
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); IMG locus_tag: BAR153v2_006630; Belongs to the peptidase S11 family.
  
     0.436
OPB31420.1
Protein of unknown function (DUF1376); IMG locus_tag: BAR153v2_003650.
  
     0.422
Your Current Organism:
Bartonella sp. AR 153
NCBI taxonomy Id: 545617
Other names: B. sp. AR 15-3, Bartonella sp. AR 15-3
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