STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR82732.1Potassium uptake protein, TrkH family; Manually curated. (450 aa)    
Predicted Functional Partners:
SDR82772.1
Trk system potassium uptake protein TrkA.
   0.982
SDS85604.1
Trk system potassium uptake protein TrkA.
   0.948
SDS45896.1
Trk system potassium uptake protein TrkA.
  
   0.776
SDS45911.1
Trk system potassium uptake protein TrkA.
  
   0.765
SDS83573.1
Voltage-gated potassium channel.
  
   0.765
SDR82802.1
Long-chain acyl-CoA synthetase.
       0.504
SDR82688.1
Cystathione beta-lyase.
       0.472
Your Current Organism:
Paraoerskovia marina
NCBI taxonomy Id: 545619
Other names: DSM 21750, DSM 22126 [[Koreibacter algae]], JCM 17443 [[Koreibacter algae]], KCTC 13436 [[Koreibacter algae]], Koreibacter algae, Koreibacter algae Lee and Lee 2010, Micrococcineae bacterium DSW-2, NBRC 104352, P. marina, Paraoerskovia marina Khan et al. 2009 emend. Schumann et al. 2013, strain CTT-37, strain DSW-2 [[Koreibacter algae]]
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