STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR87841.1cephalosporin-C deacetylase. (328 aa)    
Predicted Functional Partners:
SDR87906.1
Beta-mannosidase.
 
     0.842
SDR87883.1
Hypothetical protein.
       0.773
SDR87964.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
       0.773
SDR88005.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
       0.773
SDR88046.1
ABC-type glycerol-3-phosphate transport system, substrate-binding protein.
 
     0.649
SDS32616.1
Hypothetical protein.
  
     0.584
SDS88918.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
  
     0.433
Your Current Organism:
Paraoerskovia marina
NCBI taxonomy Id: 545619
Other names: DSM 21750, DSM 22126 [[Koreibacter algae]], JCM 17443 [[Koreibacter algae]], KCTC 13436 [[Koreibacter algae]], Koreibacter algae, Koreibacter algae Lee and Lee 2010, Micrococcineae bacterium DSW-2, NBRC 104352, P. marina, Paraoerskovia marina Khan et al. 2009 emend. Schumann et al. 2013, strain CTT-37, strain DSW-2 [[Koreibacter algae]]
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