STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS10008.1Hypothetical protein. (249 aa)    
Predicted Functional Partners:
SDS10043.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.731
SDS06213.1
Protein of unknown function.
  
     0.685
SDS06109.1
Signal transduction histidine kinase.
  
     0.598
SDS26188.1
Protein of unknown function.
  
     0.567
SDS06165.1
Hypothetical protein.
  
     0.531
SDS21792.1
Hypothetical protein.
  
     0.522
SDS29884.1
D-alanyl-D-alanine carboxypeptidase.
  
     0.520
SDS08941.1
Cold shock protein (beta-ribbon, CspA family).
  
     0.507
SDS29211.1
Ferritin; Iron-storage protein.
  
     0.457
SDS42990.1
Hypothetical protein.
  
     0.456
Your Current Organism:
Paraoerskovia marina
NCBI taxonomy Id: 545619
Other names: DSM 21750, DSM 22126 [[Koreibacter algae]], JCM 17443 [[Koreibacter algae]], KCTC 13436 [[Koreibacter algae]], Koreibacter algae, Koreibacter algae Lee and Lee 2010, Micrococcineae bacterium DSW-2, NBRC 104352, P. marina, Paraoerskovia marina Khan et al. 2009 emend. Schumann et al. 2013, strain CTT-37, strain DSW-2 [[Koreibacter algae]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.