STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS43416.1Protein of unknown function. (188 aa)    
Predicted Functional Partners:
SDS42484.1
Protein of unknown function.
 
     0.793
SDS45751.1
Protein of unknown function.
  
     0.750
rbpA
RNA polymerase-binding protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.746
SDS45623.1
Protein of unknown function.
  
     0.743
SDS51831.1
MerR HTH family regulatory protein.
  
     0.691
SDS43452.1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
       0.670
secE
Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.661
SDS48702.1
Protein of unknown function.
  
     0.644
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.641
SDS43865.1
Cytochrome c oxidase subunit IV; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
 
     0.626
Your Current Organism:
Paraoerskovia marina
NCBI taxonomy Id: 545619
Other names: DSM 21750, DSM 22126 [[Koreibacter algae]], JCM 17443 [[Koreibacter algae]], KCTC 13436 [[Koreibacter algae]], Koreibacter algae, Koreibacter algae Lee and Lee 2010, Micrococcineae bacterium DSW-2, NBRC 104352, P. marina, Paraoerskovia marina Khan et al. 2009 emend. Schumann et al. 2013, strain CTT-37, strain DSW-2 [[Koreibacter algae]]
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.