STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS53464.1Major Facilitator Superfamily protein. (421 aa)    
Predicted Functional Partners:
SDS53429.1
Helix-turn-helix domain-containing protein.
 
     0.899
arcA
Arginine deiminase.
       0.658
SDS39144.1
TIGR03083 family protein.
  
     0.565
SDS10714.1
DNA-binding transcriptional regulator, AcrR family.
  
     0.550
SDS53227.1
Penicillin amidase.
 
     0.538
SDS14689.1
Hypothetical protein.
  
     0.527
SDS38772.1
Protein of unknown function.
  
     0.512
SDS53555.1
Hypothetical protein.
       0.496
SDS14981.1
Nitroreductase.
  
     0.481
SDS53387.1
Acetyltransferase (GNAT) family protein.
       0.470
Your Current Organism:
Paraoerskovia marina
NCBI taxonomy Id: 545619
Other names: DSM 21750, DSM 22126 [[Koreibacter algae]], JCM 17443 [[Koreibacter algae]], KCTC 13436 [[Koreibacter algae]], Koreibacter algae, Koreibacter algae Lee and Lee 2010, Micrococcineae bacterium DSW-2, NBRC 104352, P. marina, Paraoerskovia marina Khan et al. 2009 emend. Schumann et al. 2013, strain CTT-37, strain DSW-2 [[Koreibacter algae]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.