STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (501 aa)    
Predicted Functional Partners:
SDS85997.1
L-ribulose 5-phosphate 4-epimerase.
 
 0.997
SDS86032.1
Sugar (pentulose or hexulose) kinase.
 
 
 0.941
SDS85739.1
Alpha-L-arabinofuranosidase.
 
 
 0.899
SDS87305.1
Xylose isomerase.
  
   
 0.707
SDS87429.1
L-rhamnulose 1-phosphate aldolase.
  
 
 0.599
SDS85931.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
 
    0.589
SDS86063.1
DNA-binding transcriptional regulator, LacI/PurR family.
    
 0.557
SDS87267.1
Xylulokinase.
  
 
 0.530
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.475
SDS86148.1
Hypothetical protein.
       0.421
Your Current Organism:
Paraoerskovia marina
NCBI taxonomy Id: 545619
Other names: DSM 21750, DSM 22126 [[Koreibacter algae]], JCM 17443 [[Koreibacter algae]], KCTC 13436 [[Koreibacter algae]], Koreibacter algae, Koreibacter algae Lee and Lee 2010, Micrococcineae bacterium DSW-2, NBRC 104352, P. marina, Paraoerskovia marina Khan et al. 2009 emend. Schumann et al. 2013, strain CTT-37, strain DSW-2 [[Koreibacter algae]]
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