Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BMQ_1690 | BMQ_1723 | BMQ_1690 | BMQ_1723 | PAS sensor protein. | Serine/threonine-protein kinase RsbT. | 0.905 |
BMQ_1690 | rsbS | BMQ_1690 | BMQ_0230 | PAS sensor protein. | Negative regulator of sigma-B activity (antagonist of RsbT). | 0.774 |
BMQ_1690 | rsbT | BMQ_1690 | BMQ_0231 | PAS sensor protein. | Serine/threonine-protein kinase RsbT. | 0.905 |
BMQ_1690 | rsbU | BMQ_1690 | BMQ_0232 | PAS sensor protein. | Phosphoserine phosphatase RsbU. | 0.737 |
BMQ_1690 | rsbW | BMQ_1690 | BMQ_0234 | PAS sensor protein. | Serine-protein kinase RsbW (anti-sigma B factor); Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | 0.670 |
BMQ_1690 | rsbX | BMQ_1690 | BMQ_0236 | PAS sensor protein. | Phosphoserine phosphatase RsbX. | 0.917 |
BMQ_1723 | BMQ_1690 | BMQ_1723 | BMQ_1690 | Serine/threonine-protein kinase RsbT. | PAS sensor protein. | 0.905 |
BMQ_1723 | pfyP | BMQ_1723 | BMQ_3060 | Serine/threonine-protein kinase RsbT. | Blue-light photoreceptor. | 0.880 |
BMQ_1723 | rsbR | BMQ_1723 | BMQ_0229 | Serine/threonine-protein kinase RsbT. | Positive regulator of sigma-B activity. | 0.914 |
BMQ_1723 | rsbS | BMQ_1723 | BMQ_0230 | Serine/threonine-protein kinase RsbT. | Negative regulator of sigma-B activity (antagonist of RsbT). | 0.982 |
BMQ_1723 | rsbU | BMQ_1723 | BMQ_0232 | Serine/threonine-protein kinase RsbT. | Phosphoserine phosphatase RsbU. | 0.812 |
BMQ_1723 | rsbV | BMQ_1723 | BMQ_0233 | Serine/threonine-protein kinase RsbT. | Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. | 0.570 |
BMQ_1723 | rsbW | BMQ_1723 | BMQ_0234 | Serine/threonine-protein kinase RsbT. | Serine-protein kinase RsbW (anti-sigma B factor); Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | 0.439 |
BMQ_1723 | rsbX | BMQ_1723 | BMQ_0236 | Serine/threonine-protein kinase RsbT. | Phosphoserine phosphatase RsbX. | 0.942 |
BMQ_1723 | sigB | BMQ_1723 | BMQ_0235 | Serine/threonine-protein kinase RsbT. | RNA polymerase sigma-B factor; Belongs to the sigma-70 factor family. | 0.582 |
pfyP | BMQ_1723 | BMQ_3060 | BMQ_1723 | Blue-light photoreceptor. | Serine/threonine-protein kinase RsbT. | 0.880 |
pfyP | rsbS | BMQ_3060 | BMQ_0230 | Blue-light photoreceptor. | Negative regulator of sigma-B activity (antagonist of RsbT). | 0.730 |
pfyP | rsbT | BMQ_3060 | BMQ_0231 | Blue-light photoreceptor. | Serine/threonine-protein kinase RsbT. | 0.877 |
pfyP | rsbU | BMQ_3060 | BMQ_0232 | Blue-light photoreceptor. | Phosphoserine phosphatase RsbU. | 0.835 |
pfyP | rsbW | BMQ_3060 | BMQ_0234 | Blue-light photoreceptor. | Serine-protein kinase RsbW (anti-sigma B factor); Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B). | 0.687 |
page 1 of 5