STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BMQ_0597Penicillin-binding protein F. (709 aa)    
Predicted Functional Partners:
BMQ_1402
Penicillin-binding protein, 1A family protein.
  
  
 
0.918
dacF
D-alanine-D-alanine carboxypetidase; Belongs to the peptidase S11 family.
  
 
 0.916
dacA
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
 
 0.910
pbpF
Penicillin-binding protein 1F.
  
  
 
0.910
dacB
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
 
 0.908
BMQ_0477
Putative D-alanyl-D-alanine carboxypeptidase.
     
 0.902
BMQ_2889
D-alanyl-D-alanine carboxypeptidase.
     
 0.902
BMQ_3490
Conserved hypothetical protein.
     
 0.902
cwlC
N-acetylmuramoyl-L-alanine amidase.
 
 
 
 0.750
cwlM
N-acetylmuramoyl-L-alanine amidase.
 
 
 
 0.736
Your Current Organism:
Bacillus megaterium QM B1551
NCBI taxonomy Id: 545693
Other names: B. megaterium QM B1551, Bacillus megaterium str. QM B1551, Bacillus megaterium strain QM B1551
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.