Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMQ_0899YhgE/Pip-like protein. (805 aa)    
Predicted Functional Partners:
BMQ_0601
Transcriptional regulator, tetR family.
 
  
 0.660
BMQ_0900
Conserved hypothetical protein.
       0.527
BMQ_0350
Conserved hypothetical protein.
 
  
 0.471
gltA
Glutamate synthase, large subunit.
       0.467
BMQ_0352
Conserved hypothetical protein.
  
     0.455
BMQ_0898
Acetyltransferase, GNAT family.
       0.450
BMQ_4053
GDSL-like lipase/acylhydrolase.
  
    0.409
BMQ_2706
GDSL-like lipase/acylhydrolase.
  
    0.404
Your Current Organism:
Bacillus megaterium QM B1551
NCBI taxonomy Id: 545693
Other names: B. megaterium QM B1551, Bacillus megaterium str. QM B1551, Bacillus megaterium strain QM B1551
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