STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hadHaloacid dehalogenase, type II. (219 aa)    
Predicted Functional Partners:
BMQ_1551
HAD superfamily (subfamily IA) hydrolase, putative.
     
  0.900
BMQ_1564
Aldehyde dehydrogenase (NAD) Family Protein; Belongs to the aldehyde dehydrogenase family.
   
 
  0.900
BMQ_2140
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
   
 
  0.900
BMQ_3373
Aldehyde dehydrogenase (NAD) family protein; Belongs to the aldehyde dehydrogenase family.
   
 
  0.900
BMQ_1539
FAD dependent oxidoreductase-aminomethyl transferase; Belongs to the GcvT family.
  
 
 0.606
BMQ_1006
Conserved hypothetical protein.
       0.494
BMQ_3623
Hydrolase, alpha/beta fold family.
 
  
 0.407
glpF
Glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.403
Your Current Organism:
Bacillus megaterium QM B1551
NCBI taxonomy Id: 545693
Other names: B. megaterium QM B1551, Bacillus megaterium str. QM B1551, Bacillus megaterium strain QM B1551
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.