STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hadHaloacid dehalogenase, type II. (219 aa)    
Predicted Functional Partners:
BMQ_1551
HAD superfamily (subfamily IA) hydrolase, putative.
     
  0.900
BMQ_1564
Aldehyde dehydrogenase (NAD) Family Protein; Belongs to the aldehyde dehydrogenase family.
   
 
  0.900
BMQ_2140
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
   
 
  0.900
BMQ_3373
Aldehyde dehydrogenase (NAD) family protein; Belongs to the aldehyde dehydrogenase family.
   
 
  0.900
BMQ_1539
FAD dependent oxidoreductase-aminomethyl transferase; Belongs to the GcvT family.
  
  
 0.536
BMQ_1006
Conserved hypothetical protein.
       0.493
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.461
BMQ_3623
Hydrolase, alpha/beta fold family.
 
  
 0.400
Your Current Organism:
Bacillus megaterium QM B1551
NCBI taxonomy Id: 545693
Other names: B. megaterium QM B1551, Bacillus megaterium str. QM B1551, Bacillus megaterium strain QM B1551
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