Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BMQ_0509 | BMQ_1720 | BMQ_0509 | BMQ_1720 | Putative oligopeptide ABC transporter, oligopetide-binding protein. | MATE efflux family protein. | 0.533 |
BMQ_0509 | nikA | BMQ_0509 | BMQ_1715 | Putative oligopeptide ABC transporter, oligopetide-binding protein. | Nickel import ABC transporter, nickel-binding protein NikA. | 0.538 |
BMQ_0509 | nikB | BMQ_0509 | BMQ_1716 | Putative oligopeptide ABC transporter, oligopetide-binding protein. | Nickel import ABC transporter, permease subunit NikB. | 0.851 |
BMQ_0509 | nikE | BMQ_0509 | BMQ_1719 | Putative oligopeptide ABC transporter, oligopetide-binding protein. | Nickel import ABC transporter, ATP-binding protein NikE. | 0.631 |
BMQ_0656 | BMQ_1720 | BMQ_0656 | BMQ_1720 | Phytoene synthase. | MATE efflux family protein. | 0.593 |
BMQ_0656 | gap | BMQ_0656 | BMQ_4760 | Phytoene synthase. | Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.662 |
BMQ_0656 | gap-2 | BMQ_0656 | BMQ_5050 | Phytoene synthase. | Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.662 |
BMQ_0656 | rpsA | BMQ_0656 | BMQ_4344 | Phytoene synthase. | 30S ribosomal protein S1. | 0.644 |
BMQ_1720 | BMQ_0509 | BMQ_1720 | BMQ_0509 | MATE efflux family protein. | Putative oligopeptide ABC transporter, oligopetide-binding protein. | 0.533 |
BMQ_1720 | BMQ_0656 | BMQ_1720 | BMQ_0656 | MATE efflux family protein. | Phytoene synthase. | 0.593 |
BMQ_1720 | BMQ_2834 | BMQ_1720 | BMQ_2834 | MATE efflux family protein. | Putative oligopeptide ABC transporter, oligopeptide-binding protein. | 0.475 |
BMQ_1720 | BMQ_3872 | BMQ_1720 | BMQ_3872 | MATE efflux family protein. | Squalene/phytoene synthase. | 0.593 |
BMQ_1720 | gap | BMQ_1720 | BMQ_4760 | MATE efflux family protein. | Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.498 |
BMQ_1720 | gap-2 | BMQ_1720 | BMQ_5050 | MATE efflux family protein. | Glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.498 |
BMQ_1720 | nikA | BMQ_1720 | BMQ_1715 | MATE efflux family protein. | Nickel import ABC transporter, nickel-binding protein NikA. | 0.510 |
BMQ_1720 | nikB | BMQ_1720 | BMQ_1716 | MATE efflux family protein. | Nickel import ABC transporter, permease subunit NikB. | 0.455 |
BMQ_1720 | nikE | BMQ_1720 | BMQ_1719 | MATE efflux family protein. | Nickel import ABC transporter, ATP-binding protein NikE. | 0.576 |
BMQ_1720 | rpsA | BMQ_1720 | BMQ_4344 | MATE efflux family protein. | 30S ribosomal protein S1. | 0.592 |
BMQ_2834 | BMQ_1720 | BMQ_2834 | BMQ_1720 | Putative oligopeptide ABC transporter, oligopeptide-binding protein. | MATE efflux family protein. | 0.475 |
BMQ_2834 | nikA | BMQ_2834 | BMQ_1715 | Putative oligopeptide ABC transporter, oligopeptide-binding protein. | Nickel import ABC transporter, nickel-binding protein NikA. | 0.533 |
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