Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BMQ_1908Conserved hypothetical protein. (110 aa)    
Predicted Functional Partners:
copZ
Copper chaperone CopZ (copper-ion-binding protein).
 
  
 0.971
copA
Copper-translocating P-type ATPase.
 
  
 0.836
BMQ_5235
Esterase.
  
  
 0.647
BMQ_0376
Transcriptional regulator, ArsR family.
 
   
 0.616
BMQ_1907
Two-component response regulator.
     
 0.534
arsR-2
Arsenical resistance operon repressor.
     
 0.518
BMQ_1906
Two-component sensor histidine kinase.
       0.518
cadA-2
Cadmium-translocating P-type ATPase.
  
  
 0.501
BMQ_1790
Putative secreted protein.
       0.478
cadA
Heavy metal translocating P-type ATPase.
 
  
 0.465
Your Current Organism:
Bacillus megaterium QM B1551
NCBI taxonomy Id: 545693
Other names: B. megaterium QM B1551, Bacillus megaterium str. QM B1551, Bacillus megaterium strain QM B1551
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